alopecia/data/validation_results.json

554 lines
8.7 KiB
JSON

{
"summary": [
{
"claim": "AA = INF axis",
"rows": [
{
"design": "Bulk disease (GSE68801, n=122)",
"metric": "inflammation\u2191 / hair\u2193",
"p": 5.2e-13,
"strong": true
},
{
"design": "Bulk treatment (GSE80342, ruxo 0-24wk)",
"metric": "infl\u2193 & hair\u2191 in responders",
"p": 0.0013,
"strong": true
},
{
"design": "Drug-perturbation (GSE167360, 5 JAK-i)",
"metric": "INF signature \u2193",
"p": 0.0196,
"strong": true
},
{
"design": "Single-cell (GSE212450+GSE316832)",
"metric": "non-replicating (capture bias)",
"p": null,
"strong": false
}
]
},
{
"claim": "AGA = DP Wnt suppression",
"rows": [
{
"design": "Single-cell DP (GSE295410)",
"metric": "Lef1/Axin2\u2193 +Cxcl12\u2191, 4/4 + reversal",
"p": 4e-79,
"strong": true
},
{
"design": "Drug-perturbation (GSE178374, DHT)",
"metric": "DKK1 \u2191",
"p": 0.0011,
"strong": true
},
{
"design": "Bulk disease (GSE90594, n=28)",
"metric": "hair-keratin \u2193",
"p": 0.0041,
"strong": true
}
]
},
{
"claim": "Treatment timing",
"rows": [
{
"design": "CT.gov trajectories (THRIVE-AA SALT)",
"metric": "JAK fit R\u00b2=0.94-0.99",
"p": null,
"strong": true
}
]
},
{
"claim": "Causal direction",
"rows": [
{
"design": "340 perturbation\u2192outcome (199 papers)",
"metric": "89.5% concordant",
"p": 0.0001,
"strong": true
}
]
}
],
"molecular": [
{
"t": "AA disease infl\u2191",
"dz": "AA",
"p": 1.7e-12
},
{
"t": "AA disease hair\u2193",
"dz": "AA",
"p": 5.2e-13
},
{
"t": "AA treat infl\u2193",
"dz": "AA",
"p": 0.0013
},
{
"t": "AA treat hair\u2191",
"dz": "AA",
"p": 0.0086
},
{
"t": "AA JAK-i INF\u2193",
"dz": "AA",
"p": 0.0196
},
{
"t": "AGA hair\u2193",
"dz": "AGA",
"p": 0.0041
},
{
"t": "AGA DHT\u2192DKK1\u2191",
"dz": "AGA",
"p": 0.0011
},
{
"t": "AGA DP Lef1\u2193(sc)",
"dz": "AGA",
"p": 4e-79
}
],
"aga_dp": {
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"TP",
"TP+Ab"
],
"genes": {
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"TP": 1.4451135396957397,
"TP+Ab": 1.6020697355270386
},
"Axin2": {
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"TP": 0.1611478328704834,
"TP+Ab": 0.3054564595222473
},
"Cxcl12": {
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"TP": 0.2333015501499176,
"TP+Ab": 0.15628264844417572
},
"Dkk1": {
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"TP+Ab": 0.0
}
}
},
"jak_drugs": {
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"JAK1i": -1.024,
"JAK2i": 1.272,
"JAK3i": -0.807,
"RUXO": -0.27,
"Tofa": -0.434
},
"aa_sc": {
"GSE212450": {
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33.6,
4.0,
48.5
],
"control": [
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8.6,
9.5,
20.3,
7.0,
2.6
]
},
"GSE316832": {
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3.0,
1.9,
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1.0,
17.2,
0.9,
7.0,
1.6,
0.4,
4.3
],
"control": [
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0.8,
1.2,
2.2,
6.1,
2.2,
6.2,
2.1,
0.0,
4.1,
0.3
]
}
},
"gwas": {
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"AA_cov": 0.5625,
"AGA_in": [
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"SRD5A2",
"WNT10A",
"FGF5"
],
"AA_in": [
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"CTLA4",
"IL2",
"IL21",
"ULBP3",
"IKZF4",
"IL13",
"CLEC16A",
"SH2B3"
]
},
"candidates": [
{
"gene": "EDA2R",
"dz": "AGA",
"axis": "AND",
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"band": "Low (50\u201370)",
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"cohesion": "weak"
},
{
"gene": "TWIST1",
"dz": "AGA",
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"band": "Low (50\u201370)",
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"cohesion": "COHERES"
},
{
"gene": "TWIST2",
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"band": "Confident (70\u201390)",
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},
{
"gene": "RUNX2",
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"band": "Low (50\u201370)",
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},
{
"gene": "DKK2",
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},
{
"gene": "FZD10",
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},
{
"gene": "PAX1",
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{
"gene": "EBF1",
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{
"gene": "IRF4",
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{
"gene": "RORA",
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},
{
"gene": "HDAC9",
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},
{
"gene": "AUTS2",
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"band": "Very low (<50)",
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},
{
"gene": "ICOS",
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"band": "Confident (70\u201390)",
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{
"gene": "CD28",
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{
"gene": "IL2RA",
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{
"gene": "ULBP6",
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{
"gene": "ERBB3",
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{
"gene": "PRDX5",
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{
"gene": "STX17",
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}
],
"landscape": {
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"agents": 22,
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"by_modality": [
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"mod": "scRNA/scATAC",
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{
"mod": "\uacf5\uac04(spatial)",
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{
"mod": "\ubc8c\ud06c RNA",
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{
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{
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{
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{
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{
"d": "\ubaa8\ub0ad\uc8fc\uae30/HFSC",
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{
"d": "\ubc18\ud754/HS/\ud56d\uc554",
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{
"d": "\uc815\uc0c1 \ub808\ud37c\ub7f0\uc2a4",
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],
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}